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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
148
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
20
DNase-seq
9
Hi-C
9
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
250
Transcription
244
DNA binding
105
DNA accessibility
9
3D chromatin structure
9
DNA methylation
Target of assay
228
histone
228
histone modification
118
broad histone mark
110
narrow histone mark
10
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
August, 2017
43
April, 2018
35
June, 2019
26
July, 2019
26
October, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
Available data
587
bigWig
565
bam
283
bed narrowPeak
248
tsv
226
fastq
99
tagAlign
97
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
28
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
618
Homo sapiens
Biosample type
1642
tissue
618
primary cell
466
cell line
296
in vitro differentiated cells
stem cell
Organ
227
epithelium
185
pancreas
34
connective tissue
31
vasculature
25
blood vessel
25
kidney
21
brain
17
vein
13
liver
12
musculature of body
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
435
AMP
180
T1D
3
HPAP
Genome assembly (visualization)
618
hg19
526
GRCh38
Lab
400
AMP-T2D consortium
215
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
37
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
heart
biosample_type!
stem cell
BIOSAMPLE
ASSAY
618 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
7
1
pancreatic alpha cell
7
10
12
6
1
pancreatic ductal cell
13
4
10
4
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