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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
148
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
26
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
250
Transcription
244
DNA binding
105
DNA accessibility
4
3D chromatin structure
Target of assay
228
histone
228
histone modification
118
broad histone mark
110
narrow histone mark
10
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
46
August, 2017
43
April, 2018
41
June, 2019
23
October, 2019
18
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
603
bigWig
597
bam
409
fastq
289
bed narrowPeak
266
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
603
Homo sapiens
Biosample type
1615
tissue
603
primary cell
466
cell line
258
in vitro differentiated cells
stem cell
Organ
231
epithelium
192
pancreas
32
connective tissue
29
vasculature
28
kidney
24
blood vessel
20
brain
15
vein
11
liver
11
musculature of body
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
413
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
587
hg19
509
GRCh38
Lab
378
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
heart
biosample_type!
stem cell
BIOSAMPLE
ASSAY
603 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
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