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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
55
DNA binding
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
31
November, 2017
10
November, 2019
9
October, 2019
3
August, 2021
3
March, 2020
2
December, 2018
1
January, 2018
1
January, 2019
1
May, 2021
1
November, 2018
Available data
119
bam
85
fastq
62
bigWig
44
bed narrowPeak
27
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
13
tagAlign
6
tsv
3
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
62
Homo sapiens
Biosample type
651
tissue
446
primary cell
95
in vitro differentiated cells
62
cell line
3
stem cell
Organ
35
liver
22
pancreas
15
epithelium
4
blood
4
bodily fluid
1
kidney
Project
60
AMP
2
T1D
Genome assembly (visualization)
61
hg19
41
GRCh38
Lab
59
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
assay_title!
total RNA-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
62 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
34
1
EndoC_BH1
12
2
Panc1
6
1
1
GM12878
3
1
glomerular visceral epithelial cell
1
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