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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
784
ChIP-seq
221
ATAC-seq
151
DNase-seq
87
RNA microarray
81
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
784
DNA binding
404
DNA accessibility
96
Transcription
29
DNA methylation
13
3D chromatin structure
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
214
October, 2019
195
August, 2017
136
June, 2019
101
February, 2021
94
May, 2019
87
August, 2021
82
November, 2017
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
46
February, 2023
40
May, 2022
32
July, 2019
26
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
21
November, 2019
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
880
bam
811
bed narrowPeak
726
bigWig
473
bigBed narrowPeak
274
fastq
238
tagAlign
186
bed broadPeak
178
bed bed3+
149
bigBed broadPeak
98
txt
64
xls
49
tsv
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1433
Homo sapiens
Biosample type
1442
tissue
832
primary cell
535
cell line
258
in vitro differentiated cells
10
stem cell
Organ
heart
249
kidney
248
brain
216
pancreas
191
liver
126
blood vessel
126
vasculature
115
limb
96
bone element
92
connective tissue
91
adipose tissue
77
musculature of body
71
artery
38
nerve
37
eye
25
spleen
20
lung
18
ureter
13
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1352
AMP
47
KPMP
24
T1D
19
LungMap
Genome assembly (visualization)
778
GRCh38
752
hg19
Lab
1212
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
1442 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
27
75
13
64
6
1
1
1
liver
145
20
2
1
1
3
1
1
1
islet of Langerhans
71
68
1
7
4
3
1
1
4
bone element
84
body of pancreas
35
4
4
2
2
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