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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
24
ChIP-seq
4
RRBS
3
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
24
DNA binding
4
DNA methylation
4
Transcription
2
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
43
June, 2019
11
August, 2017
July, 2019
7
May, 2019
5
March, 2020
2
May, 2022
1
February, 2020
1
January, 2018
Available data
63
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
4
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
70
Homo sapiens
Biosample type
59
tissue
11
primary cell
Organ
921
pancreas
695
liver
644
connective tissue
504
epithelium
471
adipose tissue
heart
343
kidney
218
vasculature
213
blood vessel
159
bone element
150
brain
132
artery
117
limb
71
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
55
hg19
48
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
organ_slims!
heart
files.file_type!
tagAlign
month_released!
July, 2019
BIOSAMPLE
ASSAY
70 results
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DNase-seq
ChIP-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of leg
13
7
muscle of arm
17
skeletal muscle tissue
7
4
1
1
1
psoas muscle
2
2
1
forelimb muscle
1
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
1
2
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