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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
57
DNA binding
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
48
histone
48
histone modification
45
narrow histone mark
12
control
3
broad histone mark
Date released
48
October, 2019
17
July, 2019
12
February, 2020
7
November, 2017
3
May, 2019
2
March, 2020
2
October, 2017
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
92
Homo sapiens
Biosample type
82
tissue
10
primary cell
Organ
842
pancreas
634
connective tissue
473
adipose tissue
441
epithelium
356
liver
heart
250
kidney
159
bone element
147
vasculature
145
blood vessel
110
artery
92
brain
55
eye
38
limb
37
embryo
34
musculature of body
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
67
hg19
60
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
heart
files.file_type!
tagAlign
bigBed narrowPeak
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
6
1
1
1
cerebellum (Hemisphere)
1
1
1
1
temporal lobe
2
1
1
frontal cortex
2
1
superior frontal gyrus
3
+ See 52 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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