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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
9
DNase-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
RRBS
Assay category
91
DNA binding
12
DNA accessibility
5
3D chromatin structure
3
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
18
control
4
RNA binding protein
4
transcription factor
Date released
47
October, 2019
45
May, 2019
6
July, 2019
6
November, 2017
5
June, 2019
2
March, 2020
Available data
109
bam
91
bigWig
80
bed narrowPeak
78
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
tsv
11
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
111
Homo sapiens
Biosample type
76
tissue
35
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
heart
168
vasculature
162
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
111
AMP
Genome assembly (visualization)
89
hg19
80
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
heart
files.file_type!
tsv
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
RRBS
tissue
tibial artery
23
2
1
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
1
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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