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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1737
ChIP-seq
1369
total RNA-seq
435
ATAC-seq
185
single cell RNA-seq
182
DNase-seq
87
RNA microarray
54
pCHi-C
36
snATAC-seq
28
Hi-C
20
WGBS
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
20
DNA methylation
Date released
9
August, 2017
7
November, 2018
4
July, 2019
Available data
12
bam
11
bed bedMethyl
11
bigBed bedMethyl
11
bigWig
11
fastq
Organism
20
Homo sapiens
Biosample type
19
tissue
1
cell line
Organ
heart
6
adipose tissue
6
connective tissue
5
liver
4
pancreas
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
20
AMP
Genome assembly (visualization)
11
GRCh38
Lab
Klaus Kaestner, Upenn
20
AMP-T2D consortium
organ_slims!
heart
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
20 results
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WGBS
tissue
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
body of pancreas
2
+ See 4 more…
cell line
HepG2
1
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