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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
pCHi-C
13
total RNA-seq
8
Hi-C
4
ATAC-seq
3
ChIP-seq
Assay category
13
Transcription
8
3D chromatin structure
4
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
602
February, 2021
411
August, 2017
406
November, 2017
379
May, 2021
340
May, 2020
302
October, 2019
227
August, 2021
183
June, 2019
168
July, 2018
99
May, 2019
94
December, 2017
93
February, 2023
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
28
March, 2020
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
18
bigWig
14
bam
13
tsv
8
bedpe bed3+
8
hic
3
bed narrowPeak
Organism
28
Homo sapiens
Biosample type
16
tissue
7
cell line
4
in vitro differentiated cells
1
primary cell
Organ
13
pancreas
6
epithelium
heart
4
musculature of body
3
blood vessel
3
vasculature
2
liver
1
vein
Project
21
AMP
7
T1D
Genome assembly (visualization)
26
hg19
14
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
organ_slims!
heart
lab.title!
Klaus Kaestner, Upenn
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
28 results
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Clear Filters
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
2
2
2
psoas muscle
2
2
aorta
1
1
liver
1
1
pancreas
1
1
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
primary cell
endothelial cell of umbilical vein
1
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