Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
46
total RNA-seq
13
ChIP-seq
2
Hi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
65
DNA accessibility
47
Transcription
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
604
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
227
August, 2021
183
June, 2019
168
July, 2018
99
May, 2019
94
December, 2017
93
February, 2023
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
83
bam
75
bed narrowPeak
51
bigWig
24
fastq
20
tsv
7
txt
2
bedpe bed3+
2
hic
1
bed bed3+
Organism
127
Homo sapiens
Biosample type
106
tissue
16
cell line
5
in vitro differentiated cells
Organ
79
pancreas
40
liver
16
epithelium
2
musculature of body
1
adipose tissue
1
connective tissue
Project
127
AMP
Genome assembly (visualization)
98
hg19
57
GRCh38
Lab
Klaus Kaestner, Upenn
63
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
1
audit script error
organ_slims!
heart
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
127 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
single cell RNA-seq
snATAC-seq
tissue
islet of Langerhans
37
25
1
liver
20
20
skeletal muscle tissue
1
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Download