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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1362
total RNA-seq
435
ATAC-seq
191
single cell RNA-seq
182
DNase-seq
87
RNA microarray
54
pCHi-C
36
snATAC-seq
28
Hi-C
20
WGBS
18
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
DNA methylation
Date released
12
July, 2019
6
August, 2017
Available data
16
bed bedMethyl
16
bigBed bedMethyl
4
fastq
Organism
18
Homo sapiens
Biosample type
9
primary cell
9
tissue
Organ
6
epithelium
5
musculature of body
4
kidney
2
brain
heart
2
liver
2
pancreas
1
connective tissue
1
eye
pericardium
1
vasculature
Project
18
AMP
Genome assembly (visualization)
16
hg19
Lab
18
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
heart
pericardium
lab.title!
Klaus Kaestner, Upenn
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
18 results
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RRBS
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
tissue
skeletal muscle tissue
4
brain
1
islet of Langerhans
1
kidney
1
liver
1
+ See 1 more…
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