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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1737
ChIP-seq
1461
total RNA-seq
483
ATAC-seq
270
single cell RNA-seq
182
DNase-seq
87
RNA microarray
84
snATAC-seq
67
WGBS
54
pCHi-C
31
Hi-C
19
RRBS
17
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
Transcription
Date released
84
February, 2021
17
July, 2019
2
December, 2019
1
August, 2021
Available data
84
txt
19
tsv
17
bam
17
bigWig
Organism
103
Homo sapiens
Biosample type
102
tissue
2
primary cell
Organ
84
bone element
4
adipose tissue
4
brain
4
connective tissue
3
kidney
3
liver
2
musculature of body
2
pancreas
1
epithelium
heart
Project
104
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
104
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
organ_slims!
heart
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
104 results
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RNA microarray
small RNA-seq
tissue
bone element
84
body of pancreas
2
right lobe of liver
2
subcutaneous adipose tissue
1
1
cerebellum (Hemisphere)
1
+ See 11 more…
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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