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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
889
total RNA-seq
508
ChIP-seq
150
DNase-seq
38
ATAC-seq
15
small RNA-seq
10
WGBS
4
FAIRE-seq
Assay category
904
Transcription
508
DNA binding
192
DNA accessibility
10
DNA methylation
Target of assay
427
histone modification
426
histone
230
narrow histone mark
196
broad histone mark
81
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
178
August, 2017
170
May, 2020
153
October, 2019
136
June, 2019
116
July, 2018
78
May, 2019
57
November, 2017
46
July, 2019
45
October, 2018
36
December, 2017
36
May, 2021
23
November, 2018
20
May, 2022
19
November, 2019
18
April, 2019
13
October, 2017
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1775
bam
1614
bigWig
965
tsv
811
bed narrowPeak
473
bigBed narrowPeak
376
fastq
238
tagAlign
185
bed broadPeak
178
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1608
Homo sapiens
Biosample type
1614
tissue
603
primary cell
466
cell line
258
in vitro differentiated cells
3
stem cell
Organ
481
connective tissue
423
adipose tissue
372
pancreas
265
liver
202
brain
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1612
AMP
2
T1D
Genome assembly (visualization)
1555
GRCh38
1537
hg19
Lab
1594
AMP-T2D consortium
20
Karen Mohlke, UNC
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
1614 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
266
29
1
2
1
liver
147
82
2
20
1
bone tissue
58
body of pancreas
2
26
4
4
2
2
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