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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
711
ChIP-seq
625
total RNA-seq
214
ATAC-seq
149
DNase-seq
86
RNA microarray
81
single cell RNA-seq
28
snATAC-seq
21
pCHi-C
13
Hi-C
13
WGBS
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
719
Transcription
711
DNA binding
395
DNA accessibility
23
DNA methylation
13
3D chromatin structure
Target of assay
501
histone modification
500
histone
274
narrow histone mark
226
broad histone mark
147
control
65
transcription factor
13
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
233
October, 2019
227
August, 2017
193
May, 2020
159
February, 2021
136
August, 2021
135
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
66
May, 2022
58
February, 2023
51
October, 2018
48
December, 2017
47
July, 2019
47
September, 2023
39
November, 2019
38
May, 2021
32
March, 2020
25
November, 2018
23
April, 2019
21
October, 2017
20
February, 2020
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1335
bam
1191
bigWig
798
bed narrowPeak
566
tsv
463
bigBed narrowPeak
333
fastq
230
tagAlign
182
bed broadPeak
172
bed bed3+
157
txt
147
bigBed broadPeak
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1967
Homo sapiens
Biosample type
1975
tissue
1073
primary cell
596
cell line
392
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
504
pancreas
adipose tissue
361
liver
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1878
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1245
GRCh38
1217
hg19
Lab
1664
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
adipose tissue
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
1975 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
WGBS
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
298
67
1
7
4
3
1
1
4
liver
145
167
20
2
1
1
1
3
1
1
kidney
27
49
75
13
64
6
1
1
1
bone element
84
bone tissue
58
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