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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1441
ChIP-seq
1361
total RNA-seq
479
ATAC-seq
273
single cell RNA-seq
177
DNase-seq
85
RNA microarray
84
snATAC-seq
58
WGBS
54
pCHi-C
31
Hi-C
17
small RNA-seq
13
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
13
DNA methylation
Date released
13
July, 2019
August, 2017
Available data
13
bed bedMethyl
13
bigBed bedMethyl
Organism
13
Homo sapiens
Biosample type
8
primary cell
5
tissue
Organ
6
epithelium
4
kidney
2
brain
heart
2
pancreas
1
connective tissue
1
eye
1
liver
1
musculature of body
1
pericardium
1
vasculature
Project
13
AMP
Genome assembly (visualization)
13
hg19
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
heart
month_released!
August, 2017
December, 2019
BIOSAMPLE
ASSAY
13 results
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RRBS
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 3 more…
tissue
brain
1
islet of Langerhans
1
kidney
1
pancreas
1
pericardium
1
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