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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
242
total RNA-seq
199
ATAC-seq
175
single cell RNA-seq
41
WGBS
29
snATAC-seq
28
DNase-seq
16
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
419
Transcription
274
DNA binding
257
DNA accessibility
51
DNA methylation
10
3D chromatin structure
Target of assay
235
histone
235
histone modification
122
broad histone mark
113
narrow histone mark
33
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
February, 2021
48
July, 2018
47
June, 2019
43
April, 2018
34
October, 2019
26
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
601
bigWig
594
bam
364
fastq
288
bed narrowPeak
259
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
33
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
1027
Homo sapiens
Biosample type
1919
tissue
1027
primary cell
566
cell line
367
in vitro differentiated cells
10
stem cell
Organ
400
epithelium
340
pancreas
37
vasculature
36
connective tissue
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
543
AMP
279
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
615
hg19
524
GRCh38
Lab
508
AMP-T2D consortium
279
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
heart
month_released!
February, 2021
BIOSAMPLE
ASSAY
1027 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
25
1
Langerhans cell
73
21
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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