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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
469
total RNA-seq
84
RNA microarray
74
ChIP-seq
27
snATAC-seq
18
single cell RNA-seq
13
ATAC-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
487
Transcription
74
DNA binding
40
DNA accessibility
6
DNA methylation
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
619
February, 2021
411
August, 2017
375
May, 2021
340
May, 2020
276
October, 2019
200
May, 2022
183
August, 2021
183
June, 2019
168
July, 2018
163
February, 2023
99
May, 2019
94
December, 2017
91
November, 2017
83
July, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
46
March, 2020
45
November, 2019
39
February, 2018
27
November, 2018
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
553
bam
515
bigWig
483
tsv
105
fastq
89
txt
54
bed narrowPeak
45
bigBed narrowPeak
6
csv
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
695
Homo sapiens
Biosample type
619
tissue
50
primary cell
cell line
26
in vitro differentiated cells
Organ
478
connective tissue
409
adipose tissue
150
bone element
59
pancreas
8
epithelium
8
kidney
8
skeleton
6
limb
1
liver
Project
650
AMP
45
HPAP
Genome assembly (visualization)
528
hg19
523
GRCh38
Lab
650
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
32
audit script error
Audit category:
1
inconsistent control read length
organ_slims!
heart
biosample_type!
cell line
BIOSAMPLE
ASSAY
695 results
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total RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
body of pancreas
33
endocrine pancreas
16
+ See 17 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
pancreatic acinar cell
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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