Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
84
RNA microarray
18
ChIP-seq
14
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
499
Transcription
18
DNA binding
14
DNA accessibility
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
3
control
1
transcription factor
Date released
604
February, 2021
396
May, 2021
341
May, 2020
306
October, 2019
227
August, 2021
183
June, 2019
176
May, 2022
124
August, 2017
118
July, 2018
99
May, 2019
93
February, 2023
83
July, 2019
82
November, 2017
61
November, 2019
57
March, 2020
47
September, 2023
23
April, 2019
22
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
582
bam
542
bigWig
509
tsv
fastq
89
txt
56
bed narrowPeak
45
bigBed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
620
Homo sapiens
Biosample type
561
tissue
30
cell line
26
in vitro differentiated cells
3
primary cell
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
heart
66
vasculature
42
pancreas
26
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
620
AMP
Genome assembly (visualization)
524
hg19
518
GRCh38
Lab
620
AMP-T2D consortium
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
organ_slims!
heart
files.file_type!
fastq
BIOSAMPLE
ASSAY
620 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
endocrine pancreas
16
kidney
5
+ See 14 more…
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
See all biosamples
Download