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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
84
RNA microarray
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
17
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
511
Transcription
49
DNA accessibility
17
DNA binding
6
DNA methylation
Target of assay
12
histone
12
histone modification
10
broad histone mark
4
control
2
narrow histone mark
1
transcription factor
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
227
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
521
bam
509
bigWig
507
tsv
89
txt
62
fastq
23
bed narrowPeak
16
tagAlign
6
bigBed narrowPeak
6
csv
4
bed bedgraph
4
bed broadPeak
2
bed bed3
2
bed bed3+
Organism
672
Homo sapiens
Biosample type
568
tissue
48
primary cell
30
cell line
26
in vitro differentiated cells
Organ
456
connective tissue
387
adipose tissue
150
bone element
66
artery
66
blood vessel
heart
66
vasculature
37
pancreas
32
epithelium
16
brain
8
kidney
8
skeleton
6
limb
3
liver
1
spleen
Project
627
AMP
45
HPAP
Genome assembly (visualization)
523
hg19
518
GRCh38
Lab
626
AMP-T2D consortium
45
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
Audit category:
4
missing controlled_by
organ_slims!
heart
BIOSAMPLE
ASSAY
672 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
brain
15
kidney
5
+ See 19 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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