Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
266
ChIP-seq
212
total RNA-seq
122
ATAC-seq
7
DNase-seq
5
pCHi-C
4
Hi-C
1
FAIRE-seq
Assay category
266
DNA binding
212
Transcription
130
DNA accessibility
4
3D chromatin structure
Target of assay
210
histone
210
histone modification
161
narrow histone mark
56
control
49
broad histone mark
Date released
641
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
276
October, 2019
200
May, 2022
169
February, 2023
168
July, 2018
102
June, 2019
97
August, 2021
94
December, 2017
94
May, 2019
88
November, 2018
76
October, 2018
73
September, 2018
72
July, 2019
61
November, 2019
59
September, 2020
55
March, 2020
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
498
bam
438
bigWig
197
tsv
195
bed narrowPeak
99
tagAlign
69
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
3
hic
2
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
617
Homo sapiens
Biosample type
423
tissue
170
primary cell
16
cell line
8
in vitro differentiated cells
Organ
201
liver
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
kidney
26
artery
21
eye
21
vein
18
pancreas
heart
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
572
AMP
45
T1D
Genome assembly (visualization)
447
hg19
385
GRCh38
Lab
572
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
heart
kidney
BIOSAMPLE
ASSAY
617 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
tissue
liver
55
144
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
brain
5
1
+ See 76 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
1
1
macrophage
11
B cell
2
2
+ See 27 more…
cell line
Panc1
13
1
1
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
See all biosamples
Download