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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
495
total RNA-seq
226
ChIP-seq
84
RNA microarray
33
ATAC-seq
27
snATAC-seq
18
single cell RNA-seq
9
DNase-seq
6
pCHi-C
3
Hi-C
3
snDrop-seq
1
FAIRE-seq
Assay category
513
Transcription
226
DNA binding
70
DNA accessibility
3
3D chromatin structure
Target of assay
184
histone
184
histone modification
136
narrow histone mark
48
broad histone mark
34
control
8
transcription factor
7
recombinant protein
Date released
617
February, 2021
406
November, 2017
341
May, 2020
335
May, 2021
288
October, 2019
223
August, 2017
223
August, 2021
179
June, 2019
113
February, 2023
97
May, 2019
96
May, 2022
94
December, 2017
81
November, 2018
77
July, 2019
47
September, 2023
43
March, 2020
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2018
21
February, 2020
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
709
bam
661
bigWig
489
tsv
188
bed narrowPeak
89
txt
63
bigBed narrowPeak
51
tagAlign
39
fastq
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
csv
4
bed bedgraph
3
hic
2
bed bed3
2
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
905
Homo sapiens
Biosample type
776
tissue
76
primary cell
34
in vitro differentiated cells
19
cell line
Organ
459
connective tissue
387
adipose tissue
150
bone element
113
blood vessel
113
vasculature
92
artery
86
brain
75
limb
heart
67
epithelium
pancreas
42
nerve
38
kidney
21
eye
21
vein
10
liver
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
866
AMP
39
HPAP
Genome assembly (visualization)
685
hg19
670
GRCh38
Lab
866
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
125
inconsistent ontology term
33
audit script error
1
inconsistent replicate
organ_slims!
heart
pancreas
BIOSAMPLE
ASSAY
905 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
snDrop-seq
FAIRE-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
14
21
10
4
tibial nerve
4
35
1
2
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primary cell
Langerhans cell
27
12
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
osteoblast
1
1
1
kidney glomerular epithelial cell
1
1
+ See 3 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
19
1
1
adipocyte
4
6
cardiomyocytes (cardiac muscle cell)
1
1
1
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 HIF2a over-expression
1
3
RCC 7860 vector
1
3
HepG2
1
1
glomerular visceral epithelial cell
1
1
+ See 1 more…
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