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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
8
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
4
WGBS
3
ATAC-seq
2
pCHi-C
1
FAIRE-seq
Assay category
108
DNA binding
12
DNA accessibility
12
Transcription
5
3D chromatin structure
4
DNA methylation
Target of assay
74
histone
74
histone modification
49
broad histone mark
25
control
25
narrow histone mark
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
47
October, 2019
45
May, 2019
9
November, 2018
8
July, 2019
7
December, 2018
7
January, 2019
6
August, 2021
5
March, 2020
3
June, 2019
3
November, 2017
2
February, 2020
1
October, 2017
Available data
128
bam
102
bigWig
90
bed narrowPeak
87
bigBed narrowPeak
27
fastq
14
tsv
12
bed broadPeak
12
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
143
Homo sapiens
Biosample type
114
tissue
29
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
143
AMP
Genome assembly (visualization)
101
hg19
96
GRCh38
Lab
143
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
heart
bodily fluid
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
WGBS
ATAC-seq
pCHi-C
FAIRE-seq
tissue
tibial artery
23
2
1
1
spleen
20
1
2
1
1
aorta
13
4
1
1
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
See all biosamples
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