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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
total RNA-seq
165
ChIP-seq
34
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
179
Transcription
165
DNA binding
34
DNA accessibility
1
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
649
February, 2021
411
August, 2017
396
May, 2021
341
May, 2020
315
November, 2017
227
August, 2021
220
October, 2019
200
May, 2022
168
February, 2023
168
July, 2018
153
June, 2019
94
December, 2017
86
November, 2018
76
October, 2018
73
September, 2018
71
May, 2019
65
July, 2019
61
November, 2019
59
September, 2020
55
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
10
February, 2020
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
300
bigWig
274
bam
170
tsv
133
bed narrowPeak
90
tagAlign
2
bed bed3+
Organism
396
Homo sapiens
Biosample type
206
primary cell
131
in vitro differentiated cells
38
tissue
21
cell line
Organ
61
pancreas
26
epithelium
heart
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
243
AMP
153
T1D
Genome assembly (visualization)
313
hg19
273
GRCh38
Lab
235
Kyle Gaulton, UCSD
161
AMP-T2D consortium
Audit category:
90
inconsistent ontology term
organ_slims!
heart
brain
BIOSAMPLE
ASSAY
396 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
52
85
13
1
1
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 11 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
tissue
islet of Langerhans
36
pancreas
1
thymus
1
cell line
EndoC_BH1
4
1
16
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