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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
DNase-seq
60
ChIP-seq
1
Hi-C
Assay category
157
DNA accessibility
60
DNA binding
1
3D chromatin structure
Target of assay
31
transcription factor
17
histone
17
histone modification
10
control
9
narrow histone mark
8
broad histone mark
5
RNA binding protein
2
chromatin remodeller
Date released
623
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
298
October, 2019
265
May, 2021
200
May, 2022
183
June, 2019
177
August, 2021
168
July, 2018
153
February, 2023
99
May, 2019
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
November, 2019
51
December, 2017
49
April, 2018
49
March, 2020
47
September, 2023
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
217
bam
207
bed narrowPeak
207
bigBed narrowPeak
207
bigWig
157
bed bed3+
157
bed broadPeak
157
bigBed broadPeak
35
fastq
Organism
218
Homo sapiens
Biosample type
143
tissue
47
primary cell
28
cell line
Organ
81
kidney
43
musculature of body
heart
32
limb
30
brain
27
blood
27
bodily fluid
20
epithelium
18
connective tissue
18
ureter
7
eye
7
spleen
7
vasculature
5
blood vessel
4
pancreas
3
liver
2
artery
1
adipose tissue
Project
218
AMP
Genome assembly (visualization)
207
GRCh38
187
hg19
Lab
218
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
1
inconsistent control
organ_slims!
heart
embryo
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
218 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
renal cortex interstitium
11
+ See 29 more…
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
retinal pigment epithelial cell
1
3
+ See 16 more…
cell line
GM12878
27
HepG2
1
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