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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
Hi-C
Assay category
20
3D chromatin structure
Date released
8
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3067
bam
2854
bigWig
1534
bed narrowPeak
1425
tsv
1358
fastq
864
bigBed narrowPeak
392
tagAlign
256
bed broadPeak
219
bigBed broadPeak
207
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
27
bed bedMethyl
27
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
20
Homo sapiens
Biosample type
8
tissue
6
primary cell
4
in vitro differentiated cells
2
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
16
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
organ_slims!
heart
limb
BIOSAMPLE
ASSAY
20 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
kidney
1
liver
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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