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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
ATAC-seq
170
DNase-seq
73
snATAC-seq
3
FAIRE-seq
Assay category
1317
DNA binding
1273
Transcription
576
DNA accessibility
22
3D chromatin structure
19
DNA methylation
1
DNA sequencing
Date released
153
June, 2019
100
May, 2020
82
August, 2021
57
February, 2023
42
May, 2022
41
February, 2021
29
October, 2019
18
May, 2021
11
May, 2023
10
April, 2020
8
January, 2021
7
November, 2018
August, 2017
6
November, 2019
4
July, 2019
3
January, 2018
3
October, 2017
2
November, 2020
Available data
336
bed narrowPeak
267
bam
260
bigWig
174
bigBed narrowPeak
172
bed bed3+
167
bed broadPeak
167
bigBed broadPeak
64
xls
37
fastq
21
zippedFastqFolder
12
bed bed3
12
tsv
7
bed bedgraph
4
txt
1
tar
Organism
575
Homo sapiens
Biosample type
319
tissue
212
primary cell
42
in vitro differentiated cells
3
cell line
Organ
pancreas
163
kidney
120
epithelium
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
32
connective tissue
32
eye
27
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
510
AMP
48
HPAP
10
LungMap
8
T1D
Genome assembly (visualization)
330
hg19
294
GRCh38
Lab
399
AMP-T2D consortium
81
Katalin Susztak, Upenn
48
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
28
audit script error
26
inconsistent ontology term
1
inconsistent replicate
organ_slims!
heart
pancreas
month_released!
August, 2017
BIOSAMPLE
ASSAY
576 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
liver
20
2
retina
15
3
muscle of arm
17
brain
1
14
+ See 51 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
+ See 52 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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