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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1010
total RNA-seq
749
ChIP-seq
220
ATAC-seq
149
DNase-seq
87
RNA microarray
87
single cell RNA-seq
28
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
10
RRBS
6
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1112
Transcription
749
DNA binding
401
DNA accessibility
29
DNA methylation
6
3D chromatin structure
Target of assay
509
histone modification
508
histone
278
narrow histone mark
230
broad histone mark
160
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
193
May, 2020
192
October, 2019
136
August, 2021
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
59
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
39
November, 2019
38
May, 2021
28
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
20
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1733
bam
1584
bigWig
959
tsv
784
bed narrowPeak
447
bigBed narrowPeak
377
fastq
238
tagAlign
184
bed broadPeak
176
bed bed3+
157
txt
147
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2404
Homo sapiens
Biosample type
2413
tissue
1071
primary cell
594
cell line
386
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
502
pancreas
488
adipose tissue
360
liver
heart
299
kidney
265
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
80
musculature of body
73
artery
56
eye
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
2316
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1637
GRCh38
1605
hg19
Lab
2102
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
spinal cord
nerve
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
2413 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
1
6
7
4
1
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
1
3
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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