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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
66
ChIP-seq
6
WGBS
small RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
398
Transcription
66
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
12
transcription factor
10
narrow histone mark
Date released
386
February, 2021
54
August, 2017
18
October, 2018
9
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
October, 2019
Available data
439
bam
422
bigWig
398
tsv
44
fastq
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
474
Homo sapiens
Biosample type
473
tissue
1
in vitro differentiated cells
1
primary cell
Organ
730
pancreas
606
connective tissue
475
adipose tissue
373
epithelium
347
liver
heart
170
kidney
151
bone element
103
vasculature
101
blood vessel
79
brain
67
artery
34
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
475
AMP
Genome assembly (visualization)
410
GRCh38
410
hg19
Lab
475
AMP-T2D consortium
Audit category:
12
missing controlled_by
organ_slims!
heart
assay_title!
small RNA-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
475 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
omental fat pad
5
8
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
See all biosamples
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