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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
7
total RNA-seq
6
RRBS
5
DNase-seq
3
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
24
DNA binding
7
DNA accessibility
7
Transcription
6
DNA methylation
3
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
12
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
36
bam
31
bigWig
21
bed narrowPeak
14
bigBed narrowPeak
7
tsv
6
bed bedMethyl
6
bigBed bedMethyl
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hdf5
1
hic
1
tar
Organism
47
Homo sapiens
Biosample type
45
primary cell
2
cell line
Organ
104
brain
74
limb
59
vasculature
58
blood vessel
48
epithelium
42
nerve
41
kidney
heart
29
artery
24
pancreas
22
connective tissue
22
eye
21
vein
17
liver
13
adipose tissue
10
musculature of body
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
Project
47
AMP
Genome assembly (visualization)
39
hg19
27
GRCh38
Lab
47
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
organ_slims!
heart
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
total RNA-seq
RRBS
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
1
1
kidney epithelial cell
1
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
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cell line
glomerular visceral epithelial cell
1
1
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