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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
41
DNase-seq
12
total RNA-seq
9
ATAC-seq
9
Hi-C
6
single cell RNA-seq
3
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
131
DNA binding
51
DNA accessibility
18
Transcription
9
3D chromatin structure
3
DNA methylation
Target of assay
99
histone
99
histone modification
65
broad histone mark
34
narrow histone mark
29
control
3
RNA binding protein
3
transcription factor
Date released
90
October, 2019
52
May, 2019
35
June, 2019
13
July, 2019
6
August, 2021
6
February, 2021
4
February, 2020
4
March, 2020
3
November, 2017
Available data
192
bam
156
bigWig
147
bed narrowPeak
138
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
43
bed bed3+
19
tsv
3
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
213
Homo sapiens
Biosample type
184
tissue
29
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
213
AMP
Genome assembly (visualization)
162
hg19
155
GRCh38
Lab
213
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
aorta
13
1
1
4
2
1
muscle of leg
7
13
1
ascending aorta
16
1
2
+ See 13 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
See all biosamples
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