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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
8
snATAC-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
66
DNA binding
11
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
30
December, 2018
21
January, 2019
18
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
71
bigWig
70
bam
70
fastq
68
bed narrowPeak
67
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
80
Homo sapiens
Biosample type
55
cell line
17
tissue
8
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
8
T1D
Genome assembly (visualization)
70
GRCh38
69
hg19
Lab
72
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
organ_slims!
heart
target.investigated_as!
control
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
cell line
GM12878
54
1
tissue
spleen
12
1
2
1
1
primary cell
peripheral blood mononuclear cell
8
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