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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
7
DNase-seq
6
single cell RNA-seq
5
Hi-C
5
total RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
68
DNA binding
11
Transcription
9
DNA accessibility
5
3D chromatin structure
3
DNA methylation
Target of assay
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
45
May, 2019
21
October, 2019
9
July, 2019
6
August, 2021
6
November, 2017
5
June, 2019
4
March, 2020
1
February, 2020
Available data
83
bam
70
bigWig
59
bed narrowPeak
58
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
12
tsv
9
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
97
Homo sapiens
Biosample type
62
tissue
35
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
Genome assembly (visualization)
72
hg19
63
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
heart
limb
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
DNase-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
aorta
13
4
1
1
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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