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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
7
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
65
DNA binding
12
Transcription
10
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
37
October, 2019
33
May, 2019
8
July, 2019
6
August, 2021
4
March, 2020
3
June, 2019
2
February, 2020
2
November, 2017
Available data
81
bam
64
bigWig
54
bed narrowPeak
52
bigBed narrowPeak
13
tsv
10
bed broadPeak
10
bigBed broadPeak
9
bed bed3+
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
95
Homo sapiens
Biosample type
73
tissue
22
primary cell
Organ
873
pancreas
691
liver
651
connective tissue
479
adipose tissue
475
epithelium
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
65
hg19
58
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
heart
target.investigated_as!
narrow histone mark
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
19
2
1
1
aorta
9
4
1
1
2
1
ascending aorta
12
1
2
thoracic aorta
12
2
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
11
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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