Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
10
total RNA-seq
5
STARR-seq
1
ATAC-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
16
DNA binding
10
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
32
August, 2021
2
March, 2019
Available data
12
bed narrowPeak
12
bigWig
10
tsv
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
34
Homo sapiens
Biosample type
31
cell line
3
tissue
Organ
28
liver
3
pancreas
2
kidney
Project
34
AMP
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
3132
AMP-T2D consortium
321
Klaus Kaestner, Upenn
283
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
organ_slims!
heart
target.investigated_as!
narrow histone mark
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
34 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
ATAC-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
16
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
1
Download