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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
Assay category
85
DNA binding
Target of assay
415
transcription factor
387
histone
387
histone modification
198
broad histone mark
188
narrow histone mark
152
control
89
recombinant protein
85
RNA binding protein
34
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
37
November, 2017
21
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
3
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
79
bam
78
bed narrowPeak
78
bigWig
74
fastq
72
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
1
tar
Organism
85
Homo sapiens
Biosample type
65
cell line
tissue
11
in vitro differentiated cells
9
primary cell
Organ
56
liver
10
blood
10
bodily fluid
8
epithelium
5
connective tissue
3
brain
2
kidney
2
vasculature
1
blood vessel
1
eye
heart
1
pancreas
Project
85
AMP
Genome assembly (visualization)
77
hg19
72
GRCh38
Lab
79
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
heart
biosample_type!
tissue
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
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