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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
20
DNase-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
pCHi-C
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
26
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
19
June, 2019
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
460
bam
443
bigWig
400
tsv
43
fastq
31
bed narrowPeak
28
bigBed narrowPeak
24
bed bed3+
21
bed broadPeak
20
bigBed broadPeak
8
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
Organism
506
Homo sapiens
Biosample type
505
tissue
2
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
507
AMP
Genome assembly (visualization)
444
hg19
442
GRCh38
Lab
507
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
intestine
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
507 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
2
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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