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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
44
ATAC-seq
11
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
57
Transcription
46
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
2
June, 2019
1
February, 2020
Available data
76
bam
64
bigWig
57
tsv
53
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
114
Homo sapiens
Biosample type
66
cell line
46
tissue
2
primary cell
Organ
945
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
114
AMP
Genome assembly (visualization)
107
GRCh38
72
hg19
Lab
114
AMP-T2D consortium
organ_slims!
intestine
limb
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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