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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
49
ATAC-seq
47
WGBS
6
MeRIP-seq
Assay category
53
Transcription
49
DNA accessibility
47
DNA methylation
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
37
February, 2023
19
September, 2020
7
August, 2020
6
February, 2021
6
November, 2020
Available data
80
zippedFastqFolder
69
fastq
10
bigWig
6
tsv
Organism
155
Homo sapiens
Biosample type
149
primary cell
6
cell line
Organ
218
pancreas
191
kidney
155
epithelium
71
liver
40
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
149
HPAP
6
AMP
Genome assembly (visualization)
10
GRCh38
Lab
AMP-T2D consortium
149
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
audit script error
organ_slims!
intestine
audit.ERROR.category!
audit script error
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
155 results
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total RNA-seq
ATAC-seq
WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
pancreatic acinar cell
4
cell line
EndoC_BH1
6
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