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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
17
DNase-seq
5
total RNA-seq
4
small RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
RRBS
Assay category
114
DNA binding
19
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
114
histone
114
histone modification
89
narrow histone mark
25
broad histone mark
Date released
78
October, 2019
25
May, 2019
15
June, 2019
10
July, 2019
6
November, 2017
6
October, 2017
2
November, 2018
1
February, 2023
Available data
139
bigWig
138
bam
130
bed narrowPeak
54
bigBed narrowPeak
43
tagAlign
26
bed broadPeak
17
bed bed3+
17
bigBed broadPeak
9
tsv
8
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
143
Homo sapiens
Biosample type
143
tissue
21
primary cell
Organ
482
connective tissue
424
adipose tissue
413
pancreas
268
liver
143
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
143
AMP
Genome assembly (visualization)
203
GRCh38
143
hg19
Lab
143
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
intestine
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
FAIRE-seq
RRBS
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
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