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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1284
total RNA-seq
1186
ChIP-seq
460
ATAC-seq
single cell RNA-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
40
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1302
Transcription
1186
DNA binding
758
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
865
histone modification
864
histone
439
narrow histone mark
425
broad histone mark
219
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
575
February, 2021
343
August, 2017
340
May, 2020
276
October, 2019
246
May, 2021
218
June, 2019
182
February, 2023
166
May, 2022
127
August, 2021
120
July, 2018
120
May, 2019
105
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
72
September, 2018
48
December, 2017
40
May, 2024
40
November, 2019
39
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
12
May, 2023
11
September, 2017
10
April, 2020
10
November, 2020
7
August, 2020
7
December, 2018
7
December, 2019
7
January, 2019
6
April, 2018
5
March, 2019
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
2416
bam
2285
bigWig
1279
bed narrowPeak
1141
tsv
670
bigBed narrowPeak
658
fastq
338
tagAlign
262
bed broadPeak
242
bed bed3+
225
bigBed broadPeak
144
txt
101
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3493
Homo sapiens
Biosample type
2601
tissue
901
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
777
pancreas
582
connective tissue
490
adipose tissue
374
liver
351
epithelium
283
brain
271
kidney
233
heart
164
vasculature
159
bone element
158
blood vessel
122
limb
95
musculature of body
73
artery
61
eye
43
nerve
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
8
blood
8
bodily fluid
5
gonad
5
ovary
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3017
AMP
239
HPAP
235
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
2295
GRCh38
2283
hg19
Lab
2738
AMP-T2D consortium
291
Kyle Gaulton, UCSD
239
Klaus Kaestner, Upenn
131
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
138
inconsistent ontology term
35
audit script error
27
inconsistent control
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
intestine
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
3502 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
298
71
68
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
3
1
1
1
1
kidney
49
27
75
13
6
1
1
1
bone element
84
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primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
31
1
pancreatic beta cell
21
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
4
33
2
1
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