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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
563
ChIP-seq
258
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1227
Transcription
563
DNA binding
292
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
narrow histone mark
283
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
218
August, 2017
166
May, 2020
120
July, 2018
109
October, 2019
95
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
52
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
36
March, 2020
25
February, 2020
25
May, 2024
19
April, 2020
18
October, 2017
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1664
bam
1504
bigWig
1074
tsv
718
bed narrowPeak
453
bigBed narrowPeak
349
fastq
199
bed bed3+
bed broadPeak
176
bigBed broadPeak
157
txt
128
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2250
Homo sapiens
Biosample type
2253
tissue
932
primary cell
590
cell line
338
in vitro differentiated cells
9
stem cell
Organ
532
connective tissue
474
adipose tissue
457
pancreas
314
liver
248
heart
221
kidney
158
bone element
120
brain
110
blood vessel
110
vasculature
71
limb
63
artery
51
eye
33
musculature of body
33
nerve
22
spleen
20
lung
16
skeleton
15
epithelium
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2158
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1423
GRCh38
1335
hg19
Lab
1918
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
21
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
intestine
files.file_type!
bed broadPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2253 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
30
66
7
4
3
1
1
4
1
adipose tissue
382
1
3
3
1
liver
167
103
20
1
3
1
1
1
1
kidney
49
17
75
64
6
1
1
1
bone element
84
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