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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
313
ChIP-seq
177
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
313
DNA binding
184
DNA accessibility
Target of assay
253
histone
253
histone modification
167
broad histone mark
86
narrow histone mark
60
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
93
May, 2019
April, 2019
57
November, 2017
47
October, 2019
45
October, 2018
36
December, 2017
22
August, 2017
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
1828
bam
1707
bigWig
1074
tsv
919
bed narrowPeak
497
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
491
Homo sapiens
Biosample type
497
tissue
355
cell line
109
primary cell
17
in vitro differentiated cells
Organ
116
brain
84
limb
69
kidney
62
blood vessel
62
pancreas
62
vasculature
49
liver
42
heart
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
497
AMP
Genome assembly (visualization)
491
GRCh38
429
hg19
Lab
497
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
intestine
month_released!
April, 2019
BIOSAMPLE
ASSAY
497 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
body of pancreas
26
4
tibial nerve
24
2
brain
6
14
tibial artery
18
2
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