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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
985
ChIP-seq
884
total RNA-seq
240
ATAC-seq
176
single cell RNA-seq
172
DNase-seq
87
RNA microarray
27
pCHi-C
23
WGBS
17
snATAC-seq
16
Hi-C
14
small RNA-seq
9
RRBS
4
GRO-seq
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
Assay category
1074
Transcription
985
DNA binding
431
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
666
histone modification
665
histone
346
narrow histone mark
318
broad histone mark
194
control
125
transcription factor
31
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
571
February, 2021
269
August, 2021
247
October, 2019
205
August, 2017
193
May, 2020
159
June, 2019
132
May, 2021
113
May, 2019
93
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
71
July, 2019
47
September, 2023
42
May, 2022
40
May, 2024
39
February, 2018
37
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
January, 2018
6
November, 2019
5
December, 2019
1
August, 2018
Available data
1766
bam
1656
bigWig
991
bed narrowPeak
930
tsv
516
bigBed narrowPeak
305
fastq
259
tagAlign
203
bed bed3+
194
bed broadPeak
171
bigBed broadPeak
154
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
14
bedpe bed3+
12
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
tagAlign bed3+
Organism
2659
Homo sapiens
Biosample type
2270
tissue
742
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
644
connective tissue
pancreas
489
adipose tissue
376
liver
314
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2594
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1736
GRCh38
1637
hg19
4
hg18
Lab
2318
AMP-T2D consortium
142
Katalin Susztak, Upenn
48
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
206
inconsistent ontology term
27
inconsistent control
10
audit script error
Audit category:
22
missing controlled_by
Audit category:
18
inconsistent control read length
organ_slims!
intestine
pancreas
BIOSAMPLE
ASSAY
2661 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
GRO-seq
snDrop-seq
Capture-C
FAIRE-seq
tissue
adipose tissue
2
382
3
1
3
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
+ See 171 more…
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
+ See 30 more…
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