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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
790
ChIP-seq
740
total RNA-seq
173
single cell RNA-seq
171
DNase-seq
130
ATAC-seq
87
RNA microarray
23
WGBS
22
pCHi-C
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
927
Transcription
790
DNA binding
320
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
29
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1478
bam
1399
bigWig
798
bed narrowPeak
795
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
147
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
1
tagAlign bed3+
Organism
2191
Homo sapiens
Biosample type
2193
tissue
691
primary cell
565
cell line
375
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
487
adipose tissue
pancreas
361
liver
299
kidney
277
heart
264
brain
150
bone element
122
limb
98
blood vessel
98
vasculature
82
musculature of body
43
nerve
38
artery
25
eye
25
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2126
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1438
GRCh38
1309
hg19
Lab
1904
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
intestine
pancreas
month_released!
February, 2023
BIOSAMPLE
ASSAY
2193 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
ATAC-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
2
3
1
liver
145
167
1
2
20
3
1
1
1
1
kidney
27
49
64
13
75
6
1
1
1
bone element
84
heart left ventricle
35
3
18
3
2
4
1
1
1
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