Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1832
ChIP-seq
1429
total RNA-seq
481
ATAC-seq
283
single cell RNA-seq
179
DNase-seq
87
RNA microarray
54
pCHi-C
35
snATAC-seq
27
WGBS
25
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
27
DNA methylation
Date released
11
July, 2019
9
August, 2017
7
November, 2018
Available data
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
11
fastq
Organism
27
Homo sapiens
Biosample type
26
tissue
1
cell line
Organ
8
heart
6
adipose tissue
6
connective tissue
5
liver
4
pancreas
2
blood vessel
2
spleen
2
vasculature
1
limb
musculature of body
Project
27
AMP
Genome assembly (visualization)
16
GRCh38
Lab
Klaus Kaestner, Upenn
27
AMP-T2D consortium
organ_slims!
intestine
musculature of body
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
27 results
search-icon
table-tab-icon
Clear Filters
WGBS
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 7 more…
cell line
HepG2
1
See all biosamples
Download