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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
90
ChIP-seq
6
ATAC-seq
6
WGBS
4
DNase-seq
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
Assay category
399
Transcription
90
DNA binding
11
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
47
histone
47
histone modification
29
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
22
October, 2019
12
July, 2019
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
462
bam
440
bigWig
399
tsv
44
fastq
26
bed narrowPeak
23
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
tar
Organism
510
Homo sapiens
Biosample type
486
tissue
24
primary cell
1
in vitro differentiated cells
Organ
945
pancreas
790
liver
682
connective tissue
524
epithelium
489
adipose tissue
390
heart
354
kidney
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
511
AMP
Genome assembly (visualization)
443
hg19
436
GRCh38
Lab
511
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
intestine
month_released!
February, 2020
BIOSAMPLE
ASSAY
511 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
6
12
1
1
1
omental fat pad
4
11
1
2
1
white adipose tissue
12
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primary cell
endothelial cell of umbilical vein
17
2
2
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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