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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
total RNA-seq
16
ATAC-seq
8
ChIP-seq
1
pCHi-C
Assay category
69
Transcription
16
DNA accessibility
8
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
2
control
Date released
128
February, 2021
90
May, 2021
26
June, 2019
23
October, 2019
22
November, 2019
17
March, 2020
11
February, 2023
8
May, 2020
6
July, 2018
6
November, 2020
4
December, 2017
3
August, 2021
3
May, 2019
2
December, 2019
2
July, 2019
1
February, 2020
1
June, 2018
Available data
77
bam
75
bigWig
69
tsv
6
bed narrowPeak
4
fastq
3
tagAlign
Organism
94
Homo sapiens
Biosample type
72
in vitro differentiated cells
21
cell line
1
primary cell
Organ
26
epithelium
21
pancreas
6
embryo
Project
92
AMP
2
T1D
Genome assembly (visualization)
75
GRCh38
75
hg19
Lab
93
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
94
inconsistent ontology term
27
inconsistent control
Audit category:
1
inconsistent control read length
organ_slims!
intestine
BIOSAMPLE
ASSAY
94 results
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total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
Hepatic endoderm
4
cardiomyocytes (cardiac muscle cell)
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
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cell line
EndoC_BH1
4
16
1
primary cell
naive B cel
1
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