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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
Hi-C
Assay category
21
3D chromatin structure
Date released
9
March, 2020
4
October, 2019
3
October, 2022
2
November, 2019
1
August, 2021
1
March, 2019
1
March, 2023
Available data
2711
bam
2507
bigWig
1424
tsv
1336
bed narrowPeak
893
fastq
684
bigBed narrowPeak
312
tagAlign
260
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
21
Homo sapiens
Biosample type
10
tissue
6
primary cell
4
in vitro differentiated cells
1
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
3
heart
3
vasculature
liver
2
musculature of body
2
vein
1
kidney
Project
17
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
20
hg19
1
GRCh38
Lab
15
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
organ_slims!
intestine
liver
BIOSAMPLE
ASSAY
21 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
See all biosamples
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