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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ATAC-seq
77
snATAC-seq
17
DNase-seq
Assay category
513
DNA binding
402
Transcription
289
DNA accessibility
78
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
60
February, 2023
60
May, 2022
55
May, 2020
27
February, 2021
16
January, 2021
16
June, 2019
16
May, 2021
13
October, 2019
10
April, 2020
7
August, 2020
3
September, 2020
2
March, 2019
1
August, 2017
1
August, 2022
1
July, 2019
1
October, 2017
Available data
60
zippedFastqFolder
51
bed narrowPeak
39
fastq
28
bigWig
19
bam
17
bed broadPeak
16
bed bed3+
16
bigBed broadPeak
16
bigBed narrowPeak
12
tsv
Organism
288
Homo sapiens
Biosample type
173
primary cell
100
tissue
16
cell line
Organ
94
pancreas
kidney
73
epithelium
38
heart
36
blood vessel
36
vasculature
35
artery
13
brain
10
lung
8
blood
8
bodily fluid
1
connective tissue
1
eye
1
liver
1
pituitary gland
1
skin of body
Project
153
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
hg19
287
GRCh38
Lab
151
AMP-T2D consortium
97
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
28
audit script error
22
inconsistent ontology term
organ_slims!
kidney
assembly!
hg19
BIOSAMPLE
ASSAY
289 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
+ See 8 more…
tissue
coronary artery
35
islet of Langerhans
26
7
lung
10
pancreas
4
body of pancreas
2
+ See 15 more…
cell line
EndoC_BH1
16
See all biosamples
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