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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
total RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
6
Transcription
4
DNA accessibility
Date released
7
May, 2022
3
February, 2023
1
October, 2022
Available data
3178
bam
2976
bigWig
1622
bed narrowPeak
1518
tsv
1356
fastq
934
bigBed narrowPeak
398
tagAlign
244
bed broadPeak
207
bigBed broadPeak
195
bed bed3+
153
zippedFastqFolder
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
11
txt
8
bed bed3
7
bed bedgraph
5
hdf5
3
cool
3
csv
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
10
Homo sapiens
Biosample type
7
tissue
3
in vitro differentiated cells
1
cell line
Organ
bone element
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
11
AMP
Genome assembly (visualization)
4
hg19
Lab
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
2
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
kidney
bone element
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
11 results
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total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
islet of Langerhans
6
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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